Counts
The fourth file is prefix.lima.counts
, a tsv file, that shows the counts of each observed barcode pair; only passing ZMWs are counted. Example:
$ column -t prefix.lima.counts
IdxFirst IdxCombined IdxFirstNamed IdxCombinedNamed Counts
1 1 bc1002 bc1002 113
14 14 bc1015 bc1015 129
18 18 bc1019 bc1019 106