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Counts

The fourth file is prefix.lima.counts, a tsv file, that shows the counts of each observed barcode pair; only passing ZMWs are counted. Example:

$ column -t prefix.lima.counts
IdxFirst  IdxCombined      IdxFirstNamed  IdxCombinedNamed  Counts
1         1                bc1002         bc1002            113
14        14               bc1015         bc1015            129
18        18               bc1019         bc1019            106

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