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Clipped regions

Using the option --dump-clips, clipped barcode regions are stored in the file prefix.lima.clips. Example:

$ head -n 6 prefix.lima.clips
>m54007_170702_064558/4850602/6488_6512 bq:34 bc:11
CATGTCCCCTCAGTTAAGTTACAA
>m54007_170702_064558/4850602/6582_6605 bq:37 bc:11
TTTTGACTAACTGATACCAATAG
>m54007_170702_064558/4916040/4801_4816 bq:93 bc:10

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