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HiFi presets

With v2.5.0 we introduced the concept of recommended parameter presets called --hifi-preset. All preset use

--ccs --min-score 80 --min-end-score 50 --min-ref-span 0.75

in addition they differ as following

Preset Definition
SYMMMETRIC --same
SYMMETRIC-ADAPTERS --same --ignore-missing-adapters
ASYMMETRIC --different --min-scoring-regions 2

For barcoded adapter libraries, SYMMETRIC-ADAPTERS will increase demultiplexed yield. More info under barcoded adapter FAQ


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