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How fast is fast?

Example: 64 barcodes / asymmetric mode / 1.9M HiFi reads on a dual 64c EPYC system:

Processed : 1912155
Throughput: 2393135/min
Run Time  : 48s 306ms
CPU Time  : 2h 14m

That’s 2.4M HiFi reads processed per minute on 128 physical CPU cores, including IO.

Is there a way to show the progress?

Yes, please use --log-level INFO. If there is a .pbi file present, the estimated time will be shown. Otherwise, it will show progress as number of reads every 5 seconds.


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